Concepts / Pretraining an LLM from Scratch

Pretraining an LLM from Scratch

A from-scratch build is defined by traceability. Every behavior of the finished model should be traceable back to a part you implemented.

  • Programming

Why the Process Matters More Than the Model

What do you think happens?

When you build an LLM yourself, where does most of the learning value come from?

  • The finished model you end up with

  • The process of writing and checking each part of the model

Reveal answer
Answer:

The process of writing and checking each part of the model.

The value of the build lies in the process of writing and checking each part, not only in the finished model. Every part has to be written, connected, and run before it does anything, and that is where the understanding comes from.

Most people first meet large language models as finished products: you type text in and a response comes out. The internals stay hidden. Building an LLM from scratch means doing the opposite. You implement the model step by step, starting from its basic components and ending with a working model whose behavior you can trace back to code you wrote yourself. This article explains what that build involves, why it teaches more than reading about the model does, and where learners commonly lose the benefit.

What Building From Scratch Means

Definition

Building an LLM from scratch means implementing the model from the ground up instead of starting from a finished, prebuilt system. The work begins with the basic components and ends with a working model whose behavior you can trace back to the code you wrote.

The phrase from scratch is the important part. A prebuilt system hides its components behind a single call, so you can use the model without knowing how any piece of it works. A from-scratch build removes that hiding place. Each component is something you wrote, so when the model behaves a certain way, you can point to the code responsible for that behavior.

Key point

A from-scratch build is defined by traceability. Every behavior of the finished model should be traceable back to a part you implemented.

Tracing the Build From Raw Parts to a Working Model

Before looking at individual stages, it helps to see the overall order. A from-scratch build starts with basic components. Within the implementation, two training functions carry the model from raw capability to a more specific behavior: pretraining and fine-tuning. Pretraining comes first. The model is trained on broad data. Fine-tuning comes after and adjusts the model for more specific behavior. The diagram below shows this sequence as a chain of stages, each one handing its result to the next.

Basic componentswritten from the ground upPretrainingtrained on broad dataFine-tuningadjusted for specificbehaviorWorking modelbehavior traceable to yourcodecomponents feed trainingbroad model is adjustedresult is usable
What is the order of stages from basic components to a usable model, and what does each stage change?

Read the diagram as a question you can answer at each arrow: what does this stage receive, and what does it hand to the next stage? If you cannot answer that for a stage, you have not yet understood it, no matter how many steps you have ticked off.

Inside the Pretraining Function

Pretraining is the stage where the model is first trained on broad data. Writing this function yourself means the training stage is visible in your own code rather than hidden inside a library call. You decide what the function receives, what it returns, and how its result feeds into the next step.

Training a model is usually a repeated loop rather than a single action. The loop shown below is the general pattern: the model makes a prediction for the next token, the error of that prediction is measured, the weights are updated to reduce the error, and the cycle repeats. Each pass changes the weights a little, so the model's behavior shifts gradually over many repetitions.

Predict next tokenmodel guesses thecontinuationMeasure errorcompare guess with theactual tokenUpdate weightsadjust to reduce the errorRepeatnext batch of textpredictionerror valueupdated weightsnext pass
What happens on each training step, and how does repeating it change the model's weights over time?

The reason to build this loop yourself is that a concept which looks clear in a diagram becomes concrete only when you write the code that performs each step. Once you have done that, you can check whether the weights really change after each pass and whether the error really falls. Those checks are part of the build, not an optional extra.

Inside the Fine-Tuning Function

Fine-tuning is the second training stage in the build. After pretraining has trained the model on broad data, fine-tuning adjusts it for more specific behavior. As with pretraining, writing this function yourself keeps the adjustment visible in your code. You can see exactly which data it receives and how it changes what the model does.

Key point

Pretraining and fine-tuning are two separate functions with two separate jobs. Pretraining works on broad data. Fine-tuning works on the model that pretraining produced and narrows its behavior.

Building Versus Studying From a Distance

A diagram or a written description of an LLM gives you a summary of how the parts relate. A from-scratch build forces you to make each relationship concrete. Every part has to be written, connected, and run before it does anything. That requirement is why a hands-on build is described as the most effective way to gain a deep understanding of how LLMs work. The table below compares the two approaches on what you control, what you can inspect, and what stays hidden.

QuestionStudying from a distanceBuilding from scratch
What do you control?Nothing in the model; you read about itEvery component, function, and connection
What can you inspect?Diagrams and descriptionsThe inputs and outputs of each function you wrote
What stays hidden?How the parts actually fit togetherLittle, because each stage is visible in your code
When does a concept become concrete?Often never, until you attempt itWhen you decide what a function receives and returns
What carries over?Mostly the vocabularyA foundation for reading other material, debugging training, and adapting models

Learning from a distance compared with learning by building

The benefit also extends past the project. The insights come from making the pieces work together, so they carry over when you read other LLM material, debug a training run, or decide how to adapt a model to a new task.

Following One Piece From First Attempt to Finished Version

Worked example

Tracing one training function through a build

You have written a pretraining function and want to know whether it is really doing its job. How do you turn it from a stage you believe in into a stage you can check?

  1. 1
    Name the inputs

    Write down exactly what the pretraining function receives. Is it a batch of text, the current weights, or something else? Writing this down forces you to decide, which a diagram alone never does.

  2. 2
    Name the outputs

    Write down what the function returns and where that result goes next. If the result is not used by the next step, the stage is disconnected from the rest of the build.

  3. 3
    Check one pass

    Run the function on a small amount of input and inspect the result. Confirm that the prediction, the measured error, and the weight update each happened in the expected order.

  4. 4
    Check repetition

    Run several passes and check that the weights change from one pass to the next. A loop that never changes the weights is not training the model, even if it runs without errors.

  5. 5
    Connect to the next stage

    Confirm that the trained model is what the fine-tuning function receives. The build works as a whole only when each stage's output is the next stage's input.

Result

The pretraining function is now a stage you have traced rather than assumed. Its inputs, outputs, and effect on the weights are all checkable in your own code.

Common Ways the Build Loses Its Value

  • Common mistake

    Treating the build as a checklist

    What it looks like

    Marking the pretraining and fine-tuning steps as done once the code runs without errors.

    Why it fails

    A from-scratch build delivers value through the process of writing and checking each part. A completed checklist does not show that you understand what each stage receives and returns.

    Do this instead

    For each stage, trace its inputs, outputs, and connections to the stages around it.

  • Common mistake

    Copying code without tracing it

    What it looks like

    Pasting the training functions into the project and moving on without working out what each line does.

    Why it fails

    If you cannot explain a function's inputs and outputs, you cannot connect its behavior to the model's behavior, which is the traceability the build is meant to give you.

    Do this instead

    Before moving on, state in your own words what each function receives, returns, and changes.

  • Common mistake

    Skipping training checks

    What it looks like

    Running the training loop once and assuming the model learned because the program finished.

    Why it fails

    A training loop that runs without errors may still leave the weights unchanged. Without checks you cannot tell learning from a silent failure.

    Do this instead

    Check that the error is measured and the weights change across repeated passes.

  • Common mistake

    Never modifying the model

    What it looks like

    Building the model once exactly as written and never changing a component to see what happens.

    Why it fails

    Understanding comes partly from seeing how a change propagates through the parts. A model you never alter shows you only one configuration.

    Do this instead

    Change one component at a time and observe how the model's behavior responds.

  • Common mistake

    Stopping after the first build instead of applying the same approach to new material

Practice: Tracing a Stage Before You Trust It

MEDIUM

Choose one stage of your own build, either pretraining or fine-tuning. Write down its inputs, its outputs, and the next stage that consumes its result. Then identify one check that would show the stage is doing its job, and state what result would tell you it is not.

Hints
  • Start with the question of what the function receives. If you cannot name the input, return to the code.
  • A training stage is doing its job if its effect on the model can be observed, not just if the program runs.
  • For the check, think about what should change between one pass and the next.

Taking the Habit Beyond One Build

Best practice

A good next step after a from-scratch build is to apply the same approach to new material. Read a concept, implement the smallest version of it, and check how it behaves. Keeping this habit preserves the benefit that made the first build valuable.

Key Takeaways

  • Building an LLM from scratch means implementing the model from the ground up, starting from basic components and ending with a working model whose behavior you can trace to code you wrote.
  • Pretraining trains the model on broad data, and fine-tuning then adjusts it for more specific behavior. Writing both functions yourself keeps each stage visible instead of hidden inside a library call.
  • A hands-on build teaches more than studying from a distance because every part must be written, connected, and run before it works, which makes abstract relationships concrete.
  • The value of the build lies in the process of writing and checking each part. Treating it as a checklist, copying code without tracing it, skipping training checks, or never modifying the model all waste that value.

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